From 8e9349742937d360d93481b0bee8ad683462cd25 Mon Sep 17 00:00:00 2001
From: Cristian Weiland <cw14@inf.ufpr.br>
Date: Tue, 31 Jan 2017 09:22:02 -0200
Subject: [PATCH] Add base scripts and config files
Signed-off-by: Cristian Weiland <cw14@inf.ufpr.br>
---
.gitignore | 1 +
config.json.example | 16 +++
configs/.config-2016-01.json.swp | Bin 0 -> 12288 bytes
configs/config-2016-01.json | 16 +++
configs/config-2016-02.json | 16 +++
configs/config-2016-03.json | 16 +++
configs/config-2016-04.json | 16 +++
configs/config-2016-05.json | 16 +++
configs/config-2016-06.json | 16 +++
configs/config-2016-07.json | 16 +++
configs/config-2016-08.json | 16 +++
configs/config-2016-09.json | 16 +++
configs/config-2016-10.json | 16 +++
configs/config-2016-11.json | 16 +++
configs/generate_config.sh | 6 ++
merge_files_es.py | 180 +++++++++++++++++++++++++++++++
resumo_cadastro.sh | 42 ++++++++
17 files changed, 421 insertions(+)
create mode 100644 .gitignore
create mode 100644 config.json.example
create mode 100644 configs/.config-2016-01.json.swp
create mode 100644 configs/config-2016-01.json
create mode 100644 configs/config-2016-02.json
create mode 100644 configs/config-2016-03.json
create mode 100644 configs/config-2016-04.json
create mode 100644 configs/config-2016-05.json
create mode 100644 configs/config-2016-06.json
create mode 100644 configs/config-2016-07.json
create mode 100644 configs/config-2016-08.json
create mode 100644 configs/config-2016-09.json
create mode 100644 configs/config-2016-10.json
create mode 100644 configs/config-2016-11.json
create mode 100644 configs/generate_config.sh
create mode 100755 merge_files_es.py
create mode 100755 resumo_cadastro.sh
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..751d80a
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1 @@
+Dados_Servidores
diff --git a/config.json.example b/config.json.example
new file mode 100644
index 0000000..f804ba6
--- /dev/null
+++ b/config.json.example
@@ -0,0 +1,16 @@
+{
+ "comment": "this file's documentation is in merge_csv_files.py"
+ , "path": "Dados_Servidores/2016-10/"
+ , "date": "20161031"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "remuneracao+ufpr.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/.config-2016-01.json.swp b/configs/.config-2016-01.json.swp
new file mode 100644
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GIT binary patch
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diff --git a/configs/config-2016-01.json b/configs/config-2016-01.json
new file mode 100644
index 0000000..79f65e9
--- /dev/null
+++ b/configs/config-2016-01.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-01/"
+ , "date": "20160131"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-02.json b/configs/config-2016-02.json
new file mode 100644
index 0000000..f5b11af
--- /dev/null
+++ b/configs/config-2016-02.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-02/"
+ , "date": "20160229"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-03.json b/configs/config-2016-03.json
new file mode 100644
index 0000000..08db9b1
--- /dev/null
+++ b/configs/config-2016-03.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-03/"
+ , "date": "20160331"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-04.json b/configs/config-2016-04.json
new file mode 100644
index 0000000..b1c6c2e
--- /dev/null
+++ b/configs/config-2016-04.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-04/"
+ , "date": "20160430"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-05.json b/configs/config-2016-05.json
new file mode 100644
index 0000000..7fd76de
--- /dev/null
+++ b/configs/config-2016-05.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-05/"
+ , "date": "20160531"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-06.json b/configs/config-2016-06.json
new file mode 100644
index 0000000..0d8123e
--- /dev/null
+++ b/configs/config-2016-06.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-06/"
+ , "date": "20160630"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-07.json b/configs/config-2016-07.json
new file mode 100644
index 0000000..eb70d53
--- /dev/null
+++ b/configs/config-2016-07.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-07/"
+ , "date": "20160731"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-08.json b/configs/config-2016-08.json
new file mode 100644
index 0000000..a3cd033
--- /dev/null
+++ b/configs/config-2016-08.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-08/"
+ , "date": "20160831"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-09.json b/configs/config-2016-09.json
new file mode 100644
index 0000000..ea230f3
--- /dev/null
+++ b/configs/config-2016-09.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-09/"
+ , "date": "20160930"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-10.json b/configs/config-2016-10.json
new file mode 100644
index 0000000..c6e61ed
--- /dev/null
+++ b/configs/config-2016-10.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-10/"
+ , "date": "20161031"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/config-2016-11.json b/configs/config-2016-11.json
new file mode 100644
index 0000000..9db5dce
--- /dev/null
+++ b/configs/config-2016-11.json
@@ -0,0 +1,16 @@
+{
+ "path": "Dados_Servidores/2016-11/"
+ , "date": "20161130"
+ , "file1" : "_Remuneracao.csv"
+ , "file2" : "_Cadastro_Ufpr_Unique.csv"
+ , "idColumn1" : 2
+ , "idColumn2" : 0
+ , "columnsToAdd1" : [2, 4, 5]
+ , "columnsToAdd2" : []
+ , "quotechar": "\""
+ , "delimiter": "\t"
+ , "lineterminator": "\n"
+ , "outputFile": "result.csv"
+ , "notFoundFile1": "not_found_1.txt"
+ , "notFoundFile2": "not_found_2.txt"
+}
diff --git a/configs/generate_config.sh b/configs/generate_config.sh
new file mode 100644
index 0000000..22810d5
--- /dev/null
+++ b/configs/generate_config.sh
@@ -0,0 +1,6 @@
+#!/bin/bash
+
+read "What is the script's date? [YYYY-MM-DD]:" date
+case $yn in | YES )
+
+esac
diff --git a/merge_files_es.py b/merge_files_es.py
new file mode 100755
index 0000000..96a4e41
--- /dev/null
+++ b/merge_files_es.py
@@ -0,0 +1,180 @@
+#!/usr/bin/env python3
+
+"""
+Versão feita visando inserção no ElasticSearch.
+Isso significa que eu vou escrever TODOS os dados que eu achar do segundo arquivo, mas do primeiro arquivo só escrevo os que estiverem no segundo.
+
+
+Recebe como parâmetro um arquivo de configuração, no mesmo formato que o exemplo.
+
+Documentação do config.json.example:
+file1 and file2 are the files that will be merged.
+The variables that end with number 1 represent something in the first file and the ones that one with 2 represent the same thing in the second file.
+idColumn represent the common column in both files.
+columnsToAdd1 are the ids of the columns that will be printed in the output file.
+ We might want to add columns 4, 13, 16 and 22 in columnsToAdd2, but this does not work right now.
+delimiter is the CSV's delimiter.
+lineterminator is the CSV's line terminator.
+outputFile is the name of the output file.
+notFoundFile is the name of a file with errors: they represent columns that were in one file but not in the other. In this case, notFoundFile1 are the columns that are in the second file but not in t he first file.
+
+
+Nesse momento, ele tá sendo usado pra unir dois arquivos: um relatório de Remuneração (ex: 201610_Remuneracao.csv) com um arquivo que contém o ID do portal das pessoas da UFPR.
+Esse segundo arquivo pode ser obtido a partir da filtragem do arquivo de Cadastros (ex: 201610_Cadastros.csv). A filtragem é feita com o resumo_cadastro.sh.
+"""
+
+import sys, csv, json, math, subprocess
+from pathlib import Path
+from subprocess import call
+
+if len(sys.argv) != 2:
+ print("Usage: " + sys.argv[0] + " <config.json>")
+ sys.exit()
+
+with open(sys.argv[1]) as f:
+ params = json.load(f)
+
+# Which files should be merged?
+file1 = params['path'] + params['date'] + params['file1']
+file2 = params['path'] + params['date'] + params['file2']
+
+# Which column in each file contains the common column?
+idPointColumn1 = params['idColumn1']
+idPointColumn2 = params['idColumn2']
+
+# What columns are important from each file?
+columnsToAdd1 = params['columnsToAdd1']
+columnsToAdd2 = params['columnsToAdd2']
+
+# In which files should we save the data not found?
+notFoundFile1 = open(params['path'] + params['notFoundFile1'], 'w')
+notFoundFile2 = open(params['path'] + params['notFoundFile2'], 'w')
+
+print("Reading files...")
+
+csv.register_dialect('dialect', lineterminator = params['lineterminator'], delimiter=params['delimiter'], quotechar=params['quotechar'])
+
+with open(file1, newline='', encoding='Windows-1252') as f:
+ csv_1 = [ i for i in csv.reader(f, 'dialect') ]
+title1 = csv_1.pop(0)
+
+file_exists = Path(file2)
+if not file_exists.is_file():
+ print("File2 does not exist. Calling script to create it...")
+ call(["./resumo_cadastro.sh " + params['path'] + " " + params['date']], shell=True)
+
+with open(file2, newline='', encoding='Windows-1252') as f:
+ #csv_2 = [ i for i in csv.reader(f, 'dialect') ]
+ #for x in csv.reader(f, 'dialect'):
+ # print(x)
+ csv_2 = [ i for i in csv.reader(f, 'dialect') ]
+# I do not do csv_2.pop(0) because in this file we are not using a header.
+title2 = csv_2.pop(0)
+
+# Having data from both files, I have to merge them.
+
+def getDataFromRows(row1, row2):
+ newRow = []
+ #for column in columnsToAdd1:
+ # newRow.append(row1[column])
+ #for column in columnsToAdd2:
+ # newRow.append(row2[column])
+ for value in row2:
+ newRow.append(value)
+ for value in row1:
+ newRow.append(value)
+ return newRow
+
+def getDataWithEmptyRow(columns, row):
+ newRow = []
+ for value in row:
+ newRow.append(value)
+ for i in range(0, columns):
+ newRow.append('')
+ return newRow
+
+result = []
+count = 0
+hits = 0
+error1 = 0
+error2 = 0
+previous = 0
+progress = 0
+const = 50 / len(csv_2)
+
+print("Preparing data...")
+
+# Get number of columns in file 1
+columns1 = len(csv_1[0])
+
+# Separate id_point from useless data in file 2 and append points in result array.
+# This for takes about 50% of the total time.
+
+for row2 in csv_2:
+ count += 1
+ if(count % 10) == 0:
+ previous = progress
+ progress = math.floor(count * const)
+ if(progress != previous):
+ print(str(progress) + '% completed.')
+ #print(count)
+ # I have IdPoint. Find the correspondent one in the other csv
+ # and add data from file 2 to file 2.
+ found = False
+ for row1 in csv_1:
+ if row1[idPointColumn1] == row2[idPointColumn2]:
+ newRow = getDataFromRows(row1, row2)
+ # To make sure we wont get the same point twice.
+ row1[idPointColumn1] = -1;
+ row2[idPointColumn2] = -1;
+ result.append(newRow)
+ found = True
+ hits += 1
+ break
+ if not found:
+ # This guy was in the second file, but not in the first one. Add him, but with null values in the second file.
+ #print("Error finding field " + row2[idPointColumn2])
+ newRow = getDataWithEmptyRow(columns1, row2)
+ result.append(newRow)
+ notFoundFile1.write(row2[idPointColumn2] + '\n')
+ error2 += 1
+
+count = 0
+const = 50 / len(csv_1)
+
+# Check if there was a point in csv_1 but not in csv_2. This is not useful anymore. It never printed 'found one'.
+"""
+for row1 in csv_1:
+ count += 1
+ if(count % 10) == 0:
+ previous = progress
+ progress = math.floor(count * const) + 50
+ if(progress != previous):
+ print(str(progress) + '% completed.')
+ if row1[idPointColumn1] != -1:
+ #print(row1[idPointColumn1])
+ found = False
+ for row2 in csv_2:
+ if row1[idPointColumn1] == row2[idPointColumn2]:
+ print('found one')
+ newRow = getDataFromRows(row1, row2)
+ result.append(newRow)
+ found = True
+ break
+ if not found:
+ #print("Error finding field " + row1[idPointColumn1])
+ error1 += 1
+
+print("Number of rows in file 1 but not in file 2: " + str(error1))
+"""
+print("Number of rows in file 2 but not in file 1: " + str(error2))
+
+print("Saving data to file result.csv...")
+
+with open(params['path'] + params['outputFile'], 'w', newline='') as csvfile:
+ writer = csv.writer(csvfile, delimiter='\t')
+ writer.writerow(getDataFromRows(title1, title2))
+ writer.writerows(result)
+
+notFoundFile1.close()
+notFoundFile2.close()
diff --git a/resumo_cadastro.sh b/resumo_cadastro.sh
new file mode 100755
index 0000000..d79d524
--- /dev/null
+++ b/resumo_cadastro.sh
@@ -0,0 +1,42 @@
+# Setembro 2016
+path=$1
+date=$2
+
+echo "Processing data with args = ${path} and ${date}"
+
+input="${path}${date}_Cadastro.csv"
+output="${path}${date}_Cadastro_Ufpr_Unique.csv"
+
+# Outubro 2016
+# input="Dados_Servidores/2016-10/20161031_Cadastro.csv"
+# output="Dados_Servidores/2016-10/cadastro_2016-10-31_filters_ufpr_unique.csv"
+
+# For now, this does not work. It does not create a properly CSV.
+columns="1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42"
+#columns="1,2,23,24"
+#columns="1"
+
+#cat $input | grep --binary-files=text "UNIVERSIDADE FEDERAL DO PARANA" | cut -f $columns | sort | uniq > $output
+
+# The same as above, but wrap fields in double quotes.
+#cat $input | grep --binary-files=text "UNIVERSIDADE FEDERAL DO PARANA" | cut -f $columns | sort | uniq | sed -e 's/"//g' -e 's/^\|$/"/g' -e 's/\t/"\t"/g' > $output
+# Sed wraps fields in double quotes. Grep removes everyone that does not work in UFPR. Cut selects the important columns. Uniq removes repeated values. Tr removes null characters (ctrl + @).
+#cat $input | grep --binary-files=text "UNIVERSIDADE FEDERAL DO PARANA" | cut -f $columns | sort | uniq | sed -e 's/"//g' -e 's/^\|$/"/g' -e 's/\t/"\t"/g' | tr -d '\000' > $output
+
+# Parece funcionar, mas pra todas as Universidades
+#cat $input | egrep --binary-files=text "(UNIVERSIDADE FED*|Id_SERVIDOR_PORTAL NOME)" | sed -e 's/"//g' -e 's/^\|$/"/g' -e 's/\t/"\t"/g' | tr -d '\000' > $output
+
+#cat $input | egrep --binary-files=text "(UNIVERSIDADE FEDERAL DO PARANA|Id_SERVIDOR_PORTAL NOME)" | sed -e 's/"//g' -e 's/^\|$/"/g' -e 's/\t/"\t"/g' | tr -d '\000' > $output
+#Mesmo que de cima, mas sem wrapar com "
+cat $input | egrep --binary-files=text "(UNIVERSIDADE FEDERAL DO PARANA|Id_SERVIDOR_PORTAL NOME)" | tr -d '\000' > $output
+
+# +--------+---------------------+--------------------------------+
+# | Column | Contains | Example |
+# +--------+---------------------+--------------------------------+
+# | 1 | Id_SERVIDOR_PORTAL | 1000021 |
+# | 2 | NOME | MARIA AUREA DOS SANTOS RIBEIRO |
+# | 24 | COD_ORG_LOTACAO | 26241 |
+# | 25 | ORG_LOTACAO | UNIVERSIDADE FEDERAL DO PARANA |
+# | 29 | UORG_EXERCICIO | BL - DEPARTAMENTO DE GENETICA | Parece que é a coluna 23 na verdade...
+# | 33 | JORNADA_DE_TRABALHO | 40 HORAS SEMANAIS |
+# +--------+---------------------+--------------------------------+
--
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