Commands.md

 # HOTMapper Commands
 
-Updated with v1.0.
+Updated with v1.1.
 
 This page contains information about all HOTMapper commands.
 
@@ -14,6 +14,10 @@ This page contains information about all HOTMapper commands.
 * [Remap](#remap)
 * [Update From file](#update_from_file)
 * [Run Aggregations](#run_aggregations)
+* [Execute Sql Group](#execute_sql_group)
+* [Drop Group](#drop_group)
+* [Rebuild Group](#rebuild_group)
+* [Run Script](#run_script)
 
 #### Basic Format
 All HOTMapper commands follow the pattern bellow:
@@ -36,6 +40,8 @@ $ ./manage.py create <table_name>
     ~~~bash
     $ ./manage.py create table_test
     ~~~
+* Optional arguments:
+  * `--ignore_definitions`: If set true, it will ignore the columns from table definition if both, table_definitions and mapping_protocol, exists (though it will still get primary_key, foreign_key and source information)'''
 
 #### insert
 The insert command puts the data from a csv file into a specified table. The commands needs the absolute path of the
@@ -75,6 +81,10 @@ $ ./manage.py remap <table_name>
     ~~~bash
     $ ./manage.py remap table_test
     ~~~
+* Optional arguments:
+  * `--auto_confirmation`: If set true, remap will not ask before doing any operation. Default=False
+  * `--verify_definitions`: If set true, remap will ask about any diference between the mapping_protocol and the table_definition columns.
+
 
 #### update_from_file
 With the update_from_file command is possible to update columns from a database table. It's used when the pairing of a
@@ -95,4 +105,56 @@ $ ./manage.py run_aggregations <table_name>
 * Example:
     ~~~bash
     $ ./manage.py run_aggregations table_test
-    ~~~
\ No newline at end of file
+    ~~~
+
+#### execute_sql_group
+This command execute a group of sql scripts, the group can be defined in the `groups.py` file or it can be a list of files using the `--files` argument.
+~~~bash
+$ ./manage.py execute_sql_group <group_name>
+~~~
+* Example
+    ~~~bash
+    $ ./manage.py execute_sql_group base
+    ~~~
+* Optional arguments:
+  * `--sql_path`: folder which contains the sql scripts. Default=SCRIPTS_FOLDER (`settings.py`)
+  * `--files`: List of files to be executed. Eg.: --files="file1.sql,file2.sql,..."
+
+#### drop_group
+This commands drop a group of tables defined in the `groups.py` file or passed as a list using `--files`.
+It will be executed in the reverse order as defined to prevent dependencies.
+~~~bash
+$ ./manage.py drop_group <group_name>
+~~~
+* Example
+    ~~~bash
+    $ ./manage.py drop_group base
+    ~~~
+* Optional arguments:
+  * `--files`: List of tables to be dropped. Eg.: --files="table1,table2,..."
+
+#### rebuild_group
+Execute the drop_group command followed by the execute_sql_group.
+~~~bash
+$ ./manage.py rebuild_group <group_name>
+~~~
+* Example
+    ~~~bash
+    $ ./manage.py rebuild_group base
+    ~~~
+* Optional arguments:
+  * `--sql_path`: folder which contains the sql scripts. Default=SCRIPTS_FOLDER (`settings.py`)
+  * `--files`: List of files to be executed. Eg.: --files="file1.sql,file2.sql,..."
+
+#### run_script
+Runs a sql, python or bash script from the scripts folder, the arguments of the script needs to be passed as a string.
+~~~bash
+$ ./manage.py run_script <script_name>
+~~~
+* Example
+    ~~~bash
+    $ ./manage.py run_script test_reference.sql
+    ~~~
+* Optional arguments:
+  * `--folder`: folder which contains the script. Default=SCRIPTS_FOLDER (`settings.py`)
+  * `--args`: List of arguments used in the script. Eg.: --args="arg1,arg2,..."